Publications

2025

Herrera, F.K.; Uhrin, A.V.; Winans, W.R.; Parrish, C.E.; Murphy, P., and Battista, T., (2025), Enhanced Detection and Classification of Beach-Stranded Macrodebris: A Pilot Study Using Polarimetric Imagery, Journal of Coastal Research,
McInturf, A.G., Teixeira, C.R., Boyt, R., Daly, E.A., English, M., Hillier, L., Hussain, C., Lowry, D., Carlisle, A.B. and Chapple, T.K., (2025), Ontogenetic and sex variation in the foraging ecology of the salmon shark (Lamna ditropis) in the California current ecosystem, Marine Biology, 172
Francis Chan, Inna Sokolova, Kay Vopel , (2025), Ocean hypoxia: The science of climate change in the sea, Scientific Reports, 15
Bednaršek, N., Pelletier, G., Kimoto, K., MacCready, P., Klinger, T. and Newton, J., (2025), Sensitivity of pteropod calcification to multi stressor variability in coastal habitats, Marine Environmental Research, 204(p.106868)
Derville S, Fisher JL, Kaplan RL, Bernard KS, Phillips EM, Torres LG , (2025), A predictive krill distribution model for Euphausia pacifica and Thysanoessa spinifera using scaled acoustic backscatter in the Northern California Current, Progress in Oceanography, 231
Bednaršek, N., van de Mortel, H., Pelletier, G., García-Reyes, M., Feely, R.A. and Dickson, A.G, (2025), Assessment framework to predict sensitivity of marine calcifiers to ocean alkalinity enhancement – identification of biological thresholds and importance of precautionary principle, European Geosciences Union, 22(2)
Nguyen, T., Pelletier, G., Bednaršek, N. and Gracey, A., (2025), Single-Larva RNA Sequencing Reveals That Red Sea Urchin Larvae Are Vulnerable to Co-Occurring Ocean Acidification and Hypoxia, Molecular Ecology , 34(4)
Kaplan RL, Bernard KS, Derville S, Fisher JL, Phillips EM, Daly EA, Warren JD, Torres LG. , (2025), Krill swarm biomass, energetic density, and species composition drive humpback whale distribution in the Northern California Current , ICES Journal of Marine Science, 82(1)

2024

Kuntz JP, Bell-Tilcock M, Vecchio JL, Wallace AA, Sturrock AM, Perry SM, Kim SL, (2024), Investigating eye lens composition for stable isotope analysis in fishes: a comparison between Chondrichthyes and Actinopterygii, Environmental Biology of Fishes,
Brandon Scott, Kevin Konrad, (2024), Seventeen Million Years of Episodic Volcanism Recorded Within the Geologist Seamounts: Implications for Tectonic Drivers of Intraplate Volcanism, Geochemistry, Geophysics, Geosystems, 25(12)
Daly, E.A., Chasco, B.E., Morgan, C.A., Burke, B.J., Osborne, K.E. and Draper, D.L., (2024), Implications of increased spatial and trophic overlap between juvenile Pacific salmon and Sablefish in the northern California Current, American Fisheries Society, 16(6)
Pascoe, D., Spiesberger, J.L. and Mellinger, D.K., (2024), Unreported large errors in a common method for sound source localization of marine mammals, The Journal of the Acoustical Society of America, 156(6)
Strub, P.T., James, C., Fisher, J.L., Fewings, M.R., Zeman, S.M., Combes, V., Garwood, J.C., Bolm, A.E. and Scherer, A., (2024), Altimeter-derived poleward Lagrangian pathways in the California Current System: Part 1, Progress in Oceanography, 229
Abele, M., M.J.M. Lomeli, W.W. Wakefield, and B. Herrmann, (2024), Semi-pelagic trawling in the U.S. West Coast groundfish bottom trawl fishery: Effects on catch efficiency and seafloor interactions, Ocean & Coastal Management, 256
Pilartes-Congo, J.A., C. Simpson, M.J. Starek, J. Berryhill, C.E. Parrish, and R.K. Slocum, (2024), Empirical Evaluation and Simulation of the Impact of Global Navigation Satellite System Solutions on Uncrewed Aircraft System–Structure from Motion for Shoreline Mapping and Charting, Drones, 8
Jung, J., C.E. Parrish, B. Costa, and S. Yoo, (2024), Simultaneous invariant normalization of waveform features from bathymetric lidar, SINWav: A Saipan case study, ISPRS Journal of Photogrammetry and Remote Sensing, 214
Simone R. Alin, Jan A. Newton, Richard A. Feely, Samantha Siedlecki, and Dana Greeley, (2024), Seasonality and response of ocean acidification and hypoxia to major environmental anomalies in the southern Salish Sea, North America (2014–2018), European Geosciences Union, 21(7)
Wells, B.K., Santora, J.A., Bizzarro, J.J., Billings, A., Brodeur, R.D., Daly, E.A., Field, J.C., Richerson, K.E. and Thorson, J.T., (2024), Trophoscapes of predatory fish reveal biogeographic structuring of spatial dietary overlap and inform fisheries bycatch patterns, Marine Ecology Progress Series, 741
Divola, C., Simms, A., Sremba, A. L., Baker, C. S., Friedlaender, A., Southon, S, (2024), Constraining the radiocarbon reservoir age for the Southern Ocean using whale bones salvaged from early 20th century whaling stations, Quaternary Science Reviews, 336
Kohlman, C., Cronin, M. F., Dziak, R., Mellinger, D. K., Sutton, A., Galbraith, M., Robert, M., Thomson, J., Zhang, D., Thompson, L, (2024), The 2019 Marine Heatwave at Ocean Station Papa: A Multi-Disciplinary Assessment of Ocean Conditions and Impacts on Marine Ecosystems, Journal of Geophysical Research: Oceans, 129(6)
Carbotte, S.M., Boston, B., Han, S., Shuck, B., Beeson, J., Canales, J.P., Tobin, H., Miller, N., Nedimovic, M., Tréhu, A. and Lee, M, (2024), Subducting plate structure and megathrust morphology from deep seismic imaging linked to earthquake rupture segmentation at Cascadia, Science Advance, 10(23)
Alejandro Fernández Ajó, Clarissa Teixeira, Daniela M.D. de Mello, Danielle Dillon, James M. Rice, C. Loren Buck, Kathleen E. Hunt, Matthew C. Rogers, Leigh G. Torres, (2024), A longitudinal study of endocrinology and foraging ecology of subadult gray whales prior to death based on baleen analysis, General and Comparative Endocrinology , 352
Slead, S.R., Wei, M., Nooner, S.L., Chadwick Jr, W.W., Caress, D.W. and Beeson, J, (2024), Compartmentalization of Axial Seamount's Magma Reservoir Inferred by Analytical and Numerical Deformation Modeling With Realistic Geometry, JGR Solid Earth, 129(5)
Cory A Berger, Deborah K Steinberg, Louise A Copeman, Ann M Tarrant, (2024), Comparative analysis of the molecular starvation response of Southern Ocean copepods, Molecular Ecology ,
Seabrook, S., Torres, M. E., Baumberger, T., Butterfield, D., Roe, K., Cummings, M., Crawford, R., Thurber, A. R. , (2024), Ubiquitous but unique: Water depth and oceanographic attributes shape methane seep communities, Limnology and Oceanography, 69(5)
Alisa A Abookire, Louise A Copeman, Michael A Litzow, Benjamin J Laurel, (2024), Seasonal shift in energy allocation from somatic growth to lipid storage and the link between pre-winter condition and overwintering potential in juvenile Pacific cod, ICES Journal of Marine Science, 81(4)
Sharr, M.B., C.E. Parrish, and J. Jung, (2024), Automated classification of valid and invalid satellite derived bathymetry with random forest, International Journal of Applied Earth Observation and Geoinformation, 129
Slesinger, E., Mundorff, S., Laurel, B.J. and Hurst, T.P, (2024), The combined effects of ocean warming and ocean acidification on Pacific cod (Gadus macrocephalus) early life stages, Marine Biology, 171(121)
Slesinger, E., du Pontavice, H., Seibel, B., Saba, V.S., Kohut, J. and Saba, G.K, (2024), Climate-induced reduction in metabolically suitable habitat for U.S. northeast shelf marine species, PLOS Climate, 171
Richard A. Feely, Brendan R. Carter, Simone R. Alin, Dana Greeley, Nina Bednaršek, (2024), The Combined Effects of Ocean Acidification and Respiration on Habitat Suitability for Marine Calcifiers Along the West Coast of North America, JGR Oceans, 129(4)
Hesser, J., Mueller, R.S., Langdon, C. and Schubiger, C.B, (2024), Immunomodulatory effects of a probiotic combination treatment to improve the survival of Pacific oyster (Crassostrea gigas) larvae against infection by Vibrio coralliilyticus, Frontier in Immunology, 15
O’Mahony, É. N., Sremba, A. L., Keen, E. M., Robinson, N., Dundas, A., Steel, D., Wray, J., Baker, C. S., Gaggiotti, O. E., (2024), Collecting baleen whale blow samples by drone: A minimally intrusive tool for conservation genetics, Molecular Ecology Resources, 24(8)
Raverty S, Duignan P, Greig D, Huggins JL, Huntington KB, Garner M, Rice, JM et al, (2024), Gray whale (Eschrichtius robustus) post-mortem findings from December 2018 through 2021 during the Unusual Mortality Event in the Eastern North Pacific, PLOS One,
Gomes, D. G. E., Ruzicka, J. J., Crozier, L. G., Huff, D. D., Brodeur, R. D., Stewart, J. D, (2024), Marine heatwaves disrupt ecosystem structure and function via altered food webs and energy flux, Nature Communications, 15
John A. Barth, Stephen D. Pierce, Brendan R. Carter, Francis Chan, Anatoli Y. Erofeev, Jennifer L. Fisher, Richard A. Feely, Kym C. Jacobson, Aimee A. Keller, Cheryl A. Morgan, John E. Pohl, Leif K. Rasmuson & Victor Simon , (2024), Widespread and increasing near-bottom hypoxia in the coastal ocean off the United States Pacific Northwest, Scientific Reports, 14
Barth, J. A., Pierce, S. D., Carter, B., Erofeev, A. Y., Fisher, J. L., Feely, R. A., Jacobson, K. C., Keller, A. A., Morgan, C. A., Pohl, J. E., Rasmuson, L. K., & Simon, V., (2024), Widespread and increasing near-bottom hypoxia in the coastal ocean off the United States Pacific Northwest, Science Advances, 9 (12)
Thompson AR, Swalethorp R, Alksne M, Santora JA, Hazen EL, Leising A, Satterthwaite E, Sydeman WJ, Anderson CR, Auth TD, Baumann-Pickering S, Baumgardner T, Bjorkstedt EP, Bograd SJ, Bowlin NM, Burke BJ, Daly EA, Dewar H, Field JC, Fisher JL, Garfield N,, (2024), State of the California Current Ecosystem report in 2022: a tale of two La Niñas, Frontier in Marine Science, 11
Simone R. Alin, Jan A. Newton, Richard A. Feely, Dana Greeley, Beth Curry, Julian Herndon, and Mark Warner, (2024), A decade-long cruise time series (2008–2018) of physical and biogeochemical conditions in the southern Salish Sea, North America, Earth System Science Data, 16(2)
Gomes, D. G. E., Ruzicka, J. J., Crozier, L. G., Huff, D. D., Phillips, E. M., Hernvann, P.-Y., Morgan, C. A., Brodeur, R. D., Zamon, J. E., Daly, E. A., Bizzarro, J. J., Fisher, J. L., Auth, T. D, (2024), An updated end-to-end ecosystem model of the Northern California Current reflecting ecosystem changes due to recent marine heatwaves, PLOS ONE, 19
Gleiber, M.R., Hardy, N.A., Roote, Z., Krug-MacLeod, A.M., Morganson, C.J., Tandy, Z., George, I., Matuch, C., Brookson, C.B., Daly, E.A. and Portner, E.J, (2024), The Pelagic Species Trait Database, an open data resource to support trait-based ocean research, Scientific Data, 11
Roerdink, D. L., Vulcano, F., Landro, J.-K., Moltubakk, K. E., Babel, H. R., Jørgensen, S. L., Baumberger, T., Økland, I. E., Reeves, E. P., Thorseth, I. H., Reigstad, L. J., Strauss, H., Steen, I. H. , (2024), Hydrothermal activity fuels microbial sulfate reduction in deep and distal marine settings along the Arctic Mid Ocean Ridges, Frontier in Marine Science, 10
Romagosa, M., Nieukirk, S., Cascão, I., Marques, T. A., Dziak, R., Royer, J.-Y., O’Brien, J., Mellinger, D. K., Pereira, A., Ugalde, A., Papale, E., Aniceto, S., Buscaino, G., Rasmussen, M., Matias, L., Prieto, R., Silva, M. A, (2024), Fin whale song evolution in the North Atlantic, eLife Science,
Nye, C., Parsons, K., Rice, J., Baker, C.S, (2024), Ecotype Origin of an Entangled Killer Whale (Orcinus orca) Identified with Remnant mtDNA, Aquatic Mammals, 50

2023

Katrin Schmidt, Martin Graeve, Clara JM Hoppe, Sinhué Torres‐Valdes, Nahid Welteke, Laura M Whitmore, Philipp Anhaus, Angus Atkinson, Simon T Belt, Tina Brenneis, Robert G Campbell, Giulia Castellani, Louise A Copeman, Hauke Flores, Allison A Fong, Nicole, (2023), Essential omega‐3 fatty acids are depleted in sea ice and pelagic algae of the Central Arctic Ocean, Global Change Biology, 30(1)
Sremba, A.L., Martin, A.R., Wilson, P., Cypriano-Souza, A.L., Buss, D.L., Hart, T., Engel, M.H., Bonatto, S.L., Rosenbaum, H., Collins, T. and Olavarría, C., (2023), Diversity of mitochondrial DNA in 3 species of great whales before and after modern whaling, Journal of Heredity, 114(6)
Pirotta, E., Fernandez Ajó, A., Bierlich, K.C., Bird, C.N., Buck, C.L., Haver, S.M., Haxel, J.H., Hildebrand, L., Hunt, K.E., Lemos, L.S. and New, L., (2023), Assessing variation in faecal glucocorticoid concentrations in gray whales exposed to anthropogenic stressors, Conservation Physiology, 11(1)
Butterfield, D. A., Walker, S. L., Baumberger, T., Beeson, J., Resing, J., Merle, S. G., Antriasian, A., Roe, K., Lu, G.-S., Barrett, P., Chadwick, W. , (2023), The PMEL Earth-Ocean Interactions Program: Beyond Vents, Oceanography, 36((2-3) p.206-211)
Bednaršek, N., Feely, R.A., Pelletier, G. and Desmet, F., (2023), Global synthesis of the status and trends of ocean acidification impacts on shelled pteropods, Oceanography, Vol. 36, No. 2-3(pp. 130-137)
Simone R. Alin , Samantha A. Siedlecki, Halle Berger, Richard A. Feely, Jeannette E. Waddell, Brendan R. Carter, Jan A. Newton, Ervin Joe Schumacker, and Daniel Ayres , (2023), Evaluating the Evolving Ocean Acidification Risk to Dungeness Crab: Time-Series Observations and Modeling on the Olympic Coast, Washington, USA, Oceanography, 36(2)
Dziak, R. P., Matsumoto, H., Haver, S. M., Mellinger, D. K., Roche, L., Haxel, J. H., Stalin, S., Meinig, C., Kohlman, K., Sremba, A., Gedamke, J., Hatch, L., Van Parijs, S., (2023), PMEL Passive Acoustics Research: Quantifying the Ocean Soundscape from Whales to Wave Energy, The Oceanography Society,